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rna seq
•
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0
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9
replies
3.8k
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How to create manhattan plot with DESeq2
deseq2
mahattan plot
RNA Seq
updated 4.5 years ago by
bernatgel
▴ 150 • written 5.5 years ago by
adeler001
• 0
2
votes
5
replies
4.4k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect
limma
rna seq
DE
updated 5.0 years ago by
Steve Lianoglou
★ 13k • written 5.0 years ago by
svlachavas
▴ 840
0
votes
3
replies
1.2k
views
Normalization of RNA seq data
RNA seq
cpm
updated 5.0 years ago by
Kevin Blighe
★ 4.0k • written 5.1 years ago by
isabel.pieterse
• 0
4
votes
4
replies
1.3k
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 9 months ago by
Sara
• 0 • written 5.4 years ago by
116100016
• 0
1
vote
4
replies
1.2k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger
RNA Seq
updated 5.4 years ago by
James W. MacDonald
68k • written 5.4 years ago by
abf
▴ 30
0
votes
0
replies
719
views
searching for specific RNA sequences
rna seq
5.4 years ago
adeler001
• 0
0
votes
2
replies
1.2k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 5.5 years ago by
Leonard Goldstein
▴ 260 • written 5.5 years ago by
116100016
• 0
0
votes
1
reply
733
views
51 views DESeq2 RNAseq differential expression analysis
deseq2
likelihood ratio
rna seq
wald test
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
adeler001
• 0
0
votes
2
replies
1.2k
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
adeler001
• 0
1
vote
5
replies
1.6k
views
Time course experiment using limma with voom
limma
voom
RNA Seq
Time-course experiments
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
mahes.muniandy
• 0
5
votes
3
replies
1.5k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq
wgcna
updated 5.9 years ago by
Peter Langfelder
★ 3.0k • written 5.9 years ago by
agustin.gonvi
▴ 20
1
vote
2
replies
2.5k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
6.0 years ago
Mozart
▴ 30
0
votes
0
replies
2.0k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2
hierarchical clustering
microarray
RNA seq
DEG
7.2 years ago
lawarde.ankita1
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
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